PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001778.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 262aa    MW: 28643.9 Da    PI: 5.1946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001778.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-2083133155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +++Wv+eIr+p++   +kr++lg++ t+e+Aa+a++ a+++l+g
  Itr_sc001778.1_g00007.1  83 PVYRGVRRRN-NNKWVCEIREPTK---QKRIWLGTYPTPEMAARAHDVAALALRG 133
                              68*****887.8*********964...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1483133IPR001471AP2/ERF domain
PROSITE profilePS5103222.02384142IPR001471AP2/ERF domain
SMARTSM003802.7E-2684148IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2084144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2884144IPR001471AP2/ERF domain
PRINTSPR003673.3E-78596IPR001471AP2/ERF domain
CDDcd000181.38E-2585144No hitNo description
PRINTSPR003673.3E-7107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDYSTSNSDP NWSSGYGFPQ GEGWSGGAAS HSDPNCWGGG YGFPQGEGWS GGRASHSDEE  60
VILAASRPKK RAGRKKFKET RHPVYRGVRR RNNNKWVCEI REPTKQKRIW LGTYPTPEMA  120
ARAHDVAALA LRGQFAATLN FADSVWRLPV PASVDAKDLR KAAVEAAEAF RPKECEEEIV  180
ITTPTSVEAP PPPPPADDPW NVLPSPPIME HDDLFTGMQG GFLGSMADGN LLSPAPSLGK  240
SFSWDEVEVE SDVEVSLWSY SI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081035.11e-75PREDICTED: dehydration-responsive element-binding protein 1D-like
RefseqXP_006358388.12e-75PREDICTED: dehydration-responsive element-binding protein 1E-like
RefseqXP_009764159.13e-75PREDICTED: dehydration-responsive element-binding protein 1F-like
RefseqXP_016473388.13e-75PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9SYS61e-57DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLW8QII43e-78W8QII4_CAMSI; Dehydration-responsive element-binding protein
STRINGPGSC0003DMT4000326226e-75(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-47ERF family protein